SubtiBank SubtiBank
yybJ [2017-12-02 18:45:33]
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yybJ [2017-12-02 18:45:33]

similar to [SW|ABC transporter ](ATP-binding protein)
locus
BSU40620
pI
8.68
mw
24.13 kDa
protein length
218 aa Sequence Blast
gene length
654 bp Sequence Blast
function
unknown
product
[SW|ABC transporter ](ATP-binding protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    4,175,869 → 4,176,525

    The protein

    Protein family

  • [SW|ABC transporter] family (according to Swiss-Prot)

    • Structure

  • [PDB|1VPL] (from Thermotoga maritima, 35% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|5A68286ADFB1B334DC626612C74D03AE4DBAF0A7|yybN]-[gene|BA4CB875FD72C7E7767AFA44A5D8C32448F5E18C|yybM]-[gene|CE98D731B8D9BDBF4EB119346BB59F5E5C48C827|yybL]-[gene|8950AD10BE5B6EDA74C341D272201D1BA9DBAC85|yybK]-[gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA] [Pubmed|27902860,15743949], in [regulon|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok regulon]
  • [protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA] [Pubmed|27902860,15743949], in [regulon|6740108089F13116F200C15F35C2E7561E990FEB|DnaA regulon]

    • regulation

  • repressed by [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[SW|DnaA] [Pubmed| 27902860,15743949]
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    Biological materials

    Mutant

  • MGNA-B844 (yybJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1843 NBRP B. subtilis, Japan]
  • BKE40620 (Δ[gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTGTTAGGTTTAATACCT, downstream forward: _UP4_TAGTTTAAACTGGCTATTTC
  • BKK40620 (Δ[gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTGTTAGGTTTAATACCT, downstream forward: _UP4_TAGTTTAAACTGGCTATTTC

    • References

  • 10092453,23199363,27902860